Playlist

Genomics & Genetics

Genome research, genetic engineering, and bioinformatics

PaperCast•35 episodes•about 6 hr
Generative Reconstruction of Unobserved Cellular Dynamics using Single-Cell Transcriptomic Trajectories

Ray, S. et al.

9:34•No ratings
cheCkOVER: An open framework and AI-ready global crayfish database for next-generation biodiversity knowledge

Parvulescu, L. et al.

6:28•No ratings
Multiple Molecular Pathways to Longevity: Opposing Gene Expression Programs Define Distinct Aging Strategies

Rudich, Z. D. et al.

9:50•No ratings
Viral Sentry AI (VirSentAI) - Automated Zoonotic Surveillance & Drug Repurposing Agent

Munteanu, C. R. et al.

7:59•No ratings
Integrative multiomic analysis on single-nucleotide variants identifies candidate genes for human craniofacial malformation

Yam, M. H. et al.

11:43•No ratings
yallHap: Modern Y-chromosome haplogroup inference with probabilistic scoring and ancient DNA support

Hardie, A.

9:20•No ratings
Towards On-Site Paleogenomics: Application and Perspective of Nanopore Sequencing with Ancient DNA

Ishiya, K. et al.

8:14•No ratings
LinearCapR: Linear-time computation of per-nucleotide structural-context probabilities of RNA without base-pair span limits

Otagaki, T. et al.

8:30•No ratings
Copy number variants (CNV) interfere with human Accelerated Regions (HARs) to cause neurodevelopmental disorders: a large-scale cohort study

Iuditskaia, M. E. et al.

8:02•No ratings
Benchmarking Free Energy Computational Methods for Revealing the Interactions Driving PARP1 Selective Inhibition

Feito, A. et al.

9:02•No ratings
GenoME: a MoE-based generative model for individualized, multimodal prediction and perturbation of genomic profiles

Wei, J. et al.

8:04•No ratings
Surprising regulatory plasticity for the conserved HOG pathway in diverse Saccharomyces cerevisiae strains

Stacy, C. L. et al.

10:03•No ratings
PocketX: Preference Alignment for Protein Pockets Design through Group Relative Policy Optimization

Fan, Y. et al.

10:39•No ratings
An Allele-Centric Pan-Graph-Matrix Representation for Scalable Pangenome Analysis
An Allele-Centric Pan-Graph-Matrix Representation for Scalable Pangenome Analysis

Roberto Garrone

8:20•No ratings
MERGE-RNA: a physics-based model to predict RNA secondary structure ensembles with chemical probing
MERGE-RNA: a physics-based model to predict RNA secondary structure ensembles with chemical probing

Giuseppe Sacco et al.

9:26•No ratings
Drug-like antibodies with low immunogenicity in human panels designed with Latent-X2
Drug-like antibodies with low immunogenicity in human panels designed with Latent-X2

Latent Labs Team et al.

9:32•No ratings
DNAMotifTokenizer: Towards Biologically Informed Tokenization of Genomic Sequences
DNAMotifTokenizer: Towards Biologically Informed Tokenization of Genomic Sequences

Xiaoxiao Zhou et al.

7:06•No ratings
UNAAGI: Atom-Level Diffusion for Generating Non-Canonical Amino Acid Substitutions
UNAAGI: Atom-Level Diffusion for Generating Non-Canonical Amino Acid Substitutions

Han Tang & Wouter Boomsma

8:32•No ratings
Decoding How Proteins Fold
Decoding How Proteins Fold

Jorge Vila

7:23•No ratings
Development of an Agentic AI Model for NGS Downstream Analysis Targeting Researchers with Limited Biological Background
Development of an Agentic AI Model for NGS Downstream Analysis Targeting Researchers with Limited Biological Background

Donghyeon Lee et al.

7:10•No ratings
needLR: Long-read structural variant annotation with population-scale frequency estimation
needLR: Long-read structural variant annotation with population-scale frequency estimation

Jonas A. Gustafson et al.

8:06•No ratings
DeeDeeExperiment: Building an infrastructure for integrating and managing omics data analysis results in R/Bioconductor
DeeDeeExperiment: Building an infrastructure for integrating and managing omics data analysis results in R/Bioconductor

Najla Abassi et al.

7:26•No ratings
Refined HLA Linkage Disequilibrium Architectures of World Populations by a Novel Allelic Correlation Measure
Refined HLA Linkage Disequilibrium Architectures of World Populations by a Novel Allelic Correlation Measure

Fei Zhang & Weixiong Zhang

8:20•No ratings
pHapCompass: Probabilistic Assembly and Uncertainty Quantification of Polyploid Haplotype Phase
pHapCompass: Probabilistic Assembly and Uncertainty Quantification of Polyploid Haplotype Phase

Marjan Hosseini et al.

11:37•No ratings
SpikGPT: A High-Accuracy and Interpretable Spiking Attention Framework for Single-Cell Annotation
SpikGPT: A High-Accuracy and Interpretable Spiking Attention Framework for Single-Cell Annotation

Min Huang & Rishikesan Kamaleswaran

11:20•No ratings
Consistent Synthetic Sequences Unlock Structural Diversity in Fully Atomistic De Novo Protein Design
Consistent Synthetic Sequences Unlock Structural Diversity in Fully Atomistic De Novo Protein Design

Danny Reidenbach et al.

10:44•No ratings
A Review of Wearable Sweat Monitoring Platforms: From Biomarker Detection to Signal Processing Systems
A Review of Wearable Sweat Monitoring Platforms: From Biomarker Detection to Signal Processing Systems

Yuhan Zheng

9:06•No ratings
deepFEPS: Deep Learning-Oriented Feature Extraction for Biological Sequences
deepFEPS: Deep Learning-Oriented Feature Extraction for Biological Sequences

Hamid Ismail & Marwan Bikdash

7:30•No ratings
Moonshine.jl: a Julia package for genome-scale model-based ancestral recombination graph inference
Moonshine.jl: a Julia package for genome-scale model-based ancestral recombination graph inference

Patrick Fournier & Fabrice Larribe

7:47•No ratings
SeqManager: A Web-Based Tool for Efficient Sequencing Data Storage Management and Duplicate Detection
SeqManager: A Web-Based Tool for Efficient Sequencing Data Storage Management and Duplicate Detection

Margot Celerie et al.

8:12•No ratings
The TAG array of a multiple sequence alignment
The TAG array of a multiple sequence alignment

Jannik Olbrich & Enno Ohlebusch

8:59•No ratings
Auxiliary Gene Learning: Spatial Gene Expression Estimation by Auxiliary Gene Selection
Auxiliary Gene Learning: Spatial Gene Expression Estimation by Auxiliary Gene Selection

Kaito Shiku et al.

9:34•
(1)
A Hybrid Computational Intelligence Framework for scRNA-seq Imputation: Integrating scRecover and Random Forests
A Hybrid Computational Intelligence Framework for scRNA-seq Imputation: Integrating scRecover and Random Forests

Ali Anaissi et al.

9:19•No ratings
CASPER: Cross-modal Alignment of Spatial and single-cell Profiles for Expression Recovery
CASPER: Cross-modal Alignment of Spatial and single-cell Profiles for Expression Recovery

Amit Kumar et al.

10:37•No ratings
Deep Pathomic Learning Defines Prognostic Subtypes and Molecular Drivers in Colorectal Cancer
Deep Pathomic Learning Defines Prognostic Subtypes and Molecular Drivers in Colorectal Cancer

Zisong Wang et al.

10:57•No ratings